nsv906206
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:72,749
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2474 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 2474 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 1563 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv906206 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nsv906206 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nsv906206 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1505167 | copy number loss | SP53287 | SNP array | SNP genotyping analysis | 14 |
| nssv1521120 | copy number loss | SP52220 | SNP array | SNP genotyping analysis | 5 |
| nssv1523614 | copy number loss | SP54117 | SNP array | SNP genotyping analysis | 11 |
| nssv1523959 | copy number loss | SP54311 | SNP array | SNP genotyping analysis | 8 |
| nssv1525142 | copy number loss | SP55531 | SNP array | SNP genotyping analysis | 8 |
| nssv1532929 | copy number loss | MS10946 | SNP array | SNP genotyping analysis | 13 |
| nssv1535180 | copy number loss | MS12055 | SNP array | SNP genotyping analysis | 10 |
| nssv1540483 | copy number loss | MS14855 | SNP array | SNP genotyping analysis | 14 |
| nssv1548056 | copy number loss | MS17689 | SNP array | SNP genotyping analysis | 17 |
| nssv1548401 | copy number loss | MS17825 | SNP array | SNP genotyping analysis | 32 |
| nssv1552220 | copy number loss | MS19292 | SNP array | SNP genotyping analysis | 6 |
| nssv1557233 | copy number loss | MS22505 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1505167 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1521120 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1523614 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1523959 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1525142 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1532929 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1535180 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1540483 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1548056 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1548401 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1552220 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1557233 | Remapped | Perfect | NC_000016.10:g.(32 520341_32520438)_( 32586373_32593089) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,520,341 | 32,520,438 | 32,586,373 | 32,593,089 |
| nssv1505167 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1521120 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1523614 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1523959 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1525142 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1532929 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1535180 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1540483 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1548056 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1548401 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1552220 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1557233 | Remapped | Perfect | NC_000016.9:g.(325 31662_32531759)_(3 2597694_32604410)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,531,662 | 32,531,759 | 32,597,694 | 32,604,410 |
| nssv1505167 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1521120 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1523614 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1523959 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1525142 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1532929 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1535180 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1540483 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1548056 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1548401 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1552220 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 | ||
| nssv1557233 | Submitted genomic | NC_000016.8:g.(324 39163_32439260)_(3 2505195_32511911)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,439,163 | 32,439,260 | 32,505,195 | 32,511,911 |