Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv906341

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:57,000

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2368 SVs from 90 studies. See in: genome view

Remapped(Score: Perfect):32,536,090-32,593,089

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv906341	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,536,090	32,538,425	32,586,373	32,593,089
nsv906341	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,547,411	32,549,746	32,597,694	32,604,410
nsv906341	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,454,912	32,457,247	32,505,195	32,511,911

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1517680	copy number loss	SP57347	SNP array	SNP genotyping analysis	20
nssv1535602	copy number loss	MS12281	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1517680	Remapped	Perfect	NC_000016.10:g.(32 536090_32538425)_( 32586373_32593089) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,536,090	32,538,425	32,586,373	32,593,089
nssv1535602	Remapped	Perfect	NC_000016.10:g.(32 536090_32538425)_( 32586373_32593089) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,536,090	32,538,425	32,586,373	32,593,089
nssv1517680	Remapped	Perfect	NC_000016.9:g.(325 47411_32549746)_(3 2597694_32604410)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,547,411	32,549,746	32,597,694	32,604,410
nssv1535602	Remapped	Perfect	NC_000016.9:g.(325 47411_32549746)_(3 2597694_32604410)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,547,411	32,549,746	32,597,694	32,604,410
nssv1517680	Submitted genomic		NC_000016.8:g.(324 54912_32457247)_(3 2505195_32511911)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,454,912	32,457,247	32,505,195	32,511,911
nssv1535602	Submitted genomic		NC_000016.8:g.(324 54912_32457247)_(3 2505195_32511911)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,454,912	32,457,247	32,505,195	32,511,911

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI