nsv906401
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,287
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2021 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 2021 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 1361 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv906401 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nsv906401 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nsv906401 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1515444 | copy number loss | SP56197 | SNP array | SNP genotyping analysis | 19 |
| nssv1519312 | copy number loss | SP81009 | SNP array | SNP genotyping analysis | 15 |
| nssv1519850 | copy number loss | SP50580 | SNP array | SNP genotyping analysis | 13 |
| nssv1520779 | copy number loss | SP51243 | SNP array | SNP genotyping analysis | 5 |
| nssv1524505 | copy number loss | SP55064 | SNP array | SNP genotyping analysis | 11 |
| nssv1525697 | copy number gain | SP56773 | SNP array | SNP genotyping analysis | 10 |
| nssv1527469 | copy number loss | SP58443 | SNP array | SNP genotyping analysis | 9 |
| nssv1527712 | copy number gain | SP80945 | SNP array | SNP genotyping analysis | 5 |
| nssv1534480 | copy number loss | MS11632 | SNP array | SNP genotyping analysis | 18 |
| nssv1539892 | copy number gain | MS14562 | SNP array | SNP genotyping analysis | 7 |
| nssv1541471 | copy number loss | MS15317 | SNP array | SNP genotyping analysis | 9 |
| nssv1545379 | copy number gain | MS16752 | SNP array | SNP genotyping analysis | 7 |
| nssv1549267 | copy number loss | MS18159 | SNP array | SNP genotyping analysis | 15 |
| nssv1557224 | copy number gain | MS22499 | SNP array | SNP genotyping analysis | 11 |
| nssv1563001 | copy number gain | MS25813 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1515444 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1519312 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1519850 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1520779 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1524505 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1525697 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1527469 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1527712 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1534480 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1539892 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1541471 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1545379 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1549267 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1557224 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1563001 | Remapped | Perfect | NC_000016.10:g.(32 550536_32551371)_( 32556599_32556822) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,550,536 | 32,551,371 | 32,556,599 | 32,556,822 |
| nssv1515444 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1519312 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1519850 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1520779 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1524505 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1525697 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1527469 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1527712 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1534480 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1539892 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1541471 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1545379 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1549267 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1557224 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1563001 | Remapped | Perfect | NC_000016.9:g.(325 61857_32562692)_(3 2567920_32568143)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,561,857 | 32,562,692 | 32,567,920 | 32,568,143 |
| nssv1515444 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1519312 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1519850 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1520779 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1524505 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1525697 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1527469 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1527712 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1534480 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1539892 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1541471 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1545379 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1549267 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1557224 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 | ||
| nssv1563001 | Submitted genomic | NC_000016.8:g.(324 69358_32470193)_(3 2475421_32475644)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,469,358 | 32,470,193 | 32,475,421 | 32,475,644 |