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dbVar

Database of genomic structural variation

nsv906415

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:35,333

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2242 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):32,550,536-32,585,868

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv906415	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,550,536	32,551,371	32,585,588	32,585,868
nsv906415	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,561,857	32,562,692	32,596,909	32,597,189
nsv906415	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,469,358	32,470,193	32,504,410	32,504,690

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1521800	copy number loss	SP52587	SNP array	SNP genotyping analysis	5
nssv1549390	copy number loss	MS18211	SNP array	SNP genotyping analysis	12
nssv1559570	copy number loss	MS24032	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1521800	Remapped	Perfect	NC_000016.10:g.(32 550536_32551371)_( 32585588_32585868) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,550,536	32,551,371	32,585,588	32,585,868
nssv1549390	Remapped	Perfect	NC_000016.10:g.(32 550536_32551371)_( 32585588_32585868) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,550,536	32,551,371	32,585,588	32,585,868
nssv1559570	Remapped	Perfect	NC_000016.10:g.(32 550536_32551371)_( 32585588_32585868) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,550,536	32,551,371	32,585,588	32,585,868
nssv1521800	Remapped	Perfect	NC_000016.9:g.(325 61857_32562692)_(3 2596909_32597189)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,561,857	32,562,692	32,596,909	32,597,189
nssv1549390	Remapped	Perfect	NC_000016.9:g.(325 61857_32562692)_(3 2596909_32597189)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,561,857	32,562,692	32,596,909	32,597,189
nssv1559570	Remapped	Perfect	NC_000016.9:g.(325 61857_32562692)_(3 2596909_32597189)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,561,857	32,562,692	32,596,909	32,597,189
nssv1521800	Submitted genomic		NC_000016.8:g.(324 69358_32470193)_(3 2504410_32504690)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,469,358	32,470,193	32,504,410	32,504,690
nssv1549390	Submitted genomic		NC_000016.8:g.(324 69358_32470193)_(3 2504410_32504690)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,469,358	32,470,193	32,504,410	32,504,690
nssv1559570	Submitted genomic		NC_000016.8:g.(324 69358_32470193)_(3 2504410_32504690)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,469,358	32,470,193	32,504,410	32,504,690

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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