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dbVar

Database of genomic structural variation

nsv906453

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:39,328

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2279 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):32,553,762-32,593,089

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv906453	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	32,553,762	32,554,646	32,586,373	32,593,089
nsv906453	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	32,565,083	32,565,967	32,597,694	32,604,410
nsv906453	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	32,472,584	32,473,468	32,505,195	32,511,911

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522274	copy number loss	SP52872	SNP array	SNP genotyping analysis	18
nssv1530007	copy number gain	MS10168	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522274	Remapped	Perfect	NC_000016.10:g.(32 553762_32554646)_( 32586373_32593089) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,553,762	32,554,646	32,586,373	32,593,089
nssv1530007	Remapped	Perfect	NC_000016.10:g.(32 553762_32554646)_( 32586373_32593089) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	32,553,762	32,554,646	32,586,373	32,593,089
nssv1522274	Remapped	Perfect	NC_000016.9:g.(325 65083_32565967)_(3 2597694_32604410)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,565,083	32,565,967	32,597,694	32,604,410
nssv1530007	Remapped	Perfect	NC_000016.9:g.(325 65083_32565967)_(3 2597694_32604410)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	32,565,083	32,565,967	32,597,694	32,604,410
nssv1522274	Submitted genomic		NC_000016.8:g.(324 72584_32473468)_(3 2505195_32511911)d el	NCBI36 (hg18)		NC_000016.8	Chr16	32,472,584	32,473,468	32,505,195	32,511,911
nssv1530007	Submitted genomic		NC_000016.8:g.(324 72584_32473468)_(3 2505195_32511911)d up	NCBI36 (hg18)		NC_000016.8	Chr16	32,472,584	32,473,468	32,505,195	32,511,911

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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