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dbVar

Database of genomic structural variation

nsv906610

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:113,720

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1700 SVs from 88 studies. See in: genome view

Remapped(Score: Perfect):34,006,099-34,119,818

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv906610	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nsv906610	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nsv906610	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1533161	copy number loss	MS11032	SNP array	SNP genotyping analysis	23
nssv1581019	copy number gain	IS35487	SNP array	SNP genotyping analysis	18
nssv1581206	copy number loss	IS35533	SNP array	SNP genotyping analysis	14
nssv1588151	copy number loss	IS38168	SNP array	SNP genotyping analysis	8
nssv1589890	copy number loss	IS38425	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1533161	Remapped	Perfect	NC_000016.10:g.(34 006099_34025803)_( 34110339_34119818) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nssv1581019	Remapped	Perfect	NC_000016.10:g.(34 006099_34025803)_( 34110339_34119818) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nssv1581206	Remapped	Perfect	NC_000016.10:g.(34 006099_34025803)_( 34110339_34119818) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nssv1588151	Remapped	Perfect	NC_000016.10:g.(34 006099_34025803)_( 34110339_34119818) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nssv1589890	Remapped	Perfect	NC_000016.10:g.(34 006099_34025803)_( 34110339_34119818) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	34,006,099	34,025,803	34,110,339	34,119,818
nssv1533161	Remapped	Perfect	NC_000016.9:g.(338 08566_33828270)_(3 3912806_33922285)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nssv1581019	Remapped	Perfect	NC_000016.9:g.(338 08566_33828270)_(3 3912806_33922285)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nssv1581206	Remapped	Perfect	NC_000016.9:g.(338 08566_33828270)_(3 3912806_33922285)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nssv1588151	Remapped	Perfect	NC_000016.9:g.(338 08566_33828270)_(3 3912806_33922285)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nssv1589890	Remapped	Perfect	NC_000016.9:g.(338 08566_33828270)_(3 3912806_33922285)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	33,808,566	33,828,270	33,912,806	33,922,285
nssv1533161	Submitted genomic		NC_000016.8:g.(337 16067_33735771)_(3 3820307_33829786)d el	NCBI36 (hg18)		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786
nssv1581019	Submitted genomic		NC_000016.8:g.(337 16067_33735771)_(3 3820307_33829786)d up	NCBI36 (hg18)		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786
nssv1581206	Submitted genomic		NC_000016.8:g.(337 16067_33735771)_(3 3820307_33829786)d el	NCBI36 (hg18)		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786
nssv1588151	Submitted genomic		NC_000016.8:g.(337 16067_33735771)_(3 3820307_33829786)d el	NCBI36 (hg18)		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786
nssv1589890	Submitted genomic		NC_000016.8:g.(337 16067_33735771)_(3 3820307_33829786)d el	NCBI36 (hg18)		NC_000016.8	Chr16	33,716,067	33,735,771	33,820,307	33,829,786

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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