nsv907002
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:69,524
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 411 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 411 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 144 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv907002 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 80,407,523 | 80,415,343 | 80,474,158 | 80,477,046 |
| nsv907002 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 80,441,420 | 80,449,240 | 80,508,055 | 80,510,943 |
| nsv907002 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 78,998,921 | 79,006,741 | 79,065,556 | 79,068,444 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1577732 | copy number loss | IS34543 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1577732 | Remapped | Perfect | NC_000016.10:g.(80 407523_80415343)_( 80474158_80477046) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 80,407,523 | 80,415,343 | 80,474,158 | 80,477,046 |
| nssv1577732 | Remapped | Perfect | NC_000016.9:g.(804 41420_80449240)_(8 0508055_80510943)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 80,441,420 | 80,449,240 | 80,508,055 | 80,510,943 |
| nssv1577732 | Submitted genomic | NC_000016.8:g.(789 98921_79006741)_(7 9065556_79068444)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 78,998,921 | 79,006,741 | 79,065,556 | 79,068,444 |