nsv907057
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:54,446
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 519 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 519 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 186 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv907057 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 84,037,220 | 84,041,958 | 84,087,051 | 84,091,665 |
| nsv907057 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 84,070,825 | 84,075,563 | 84,120,656 | 84,125,270 |
| nsv907057 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 82,628,326 | 82,633,064 | 82,678,157 | 82,682,771 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1596182 | copy number gain | IS40429 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1596182 | Remapped | Perfect | NC_000016.10:g.(84 037220_84041958)_( 84087051_84091665) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 84,037,220 | 84,041,958 | 84,087,051 | 84,091,665 |
| nssv1596182 | Remapped | Perfect | NC_000016.9:g.(840 70825_84075563)_(8 4120656_84125270)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 84,070,825 | 84,075,563 | 84,120,656 | 84,125,270 |
| nssv1596182 | Submitted genomic | NC_000016.8:g.(826 28326_82633064)_(8 2678157_82682771)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 82,628,326 | 82,633,064 | 82,678,157 | 82,682,771 |