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dbVar

Database of genomic structural variation

nsv907392

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:61,684

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 871 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):89,145,792-89,207,475

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv907392	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	89,145,792	89,166,060	89,197,443	89,207,475
nsv907392	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	89,212,200	89,232,468	89,263,851	89,273,883
nsv907392	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	87,739,701	87,759,969	87,791,352	87,801,384

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1544314	copy number loss	MS16315	SNP array	SNP genotyping analysis	176
nssv1576387	copy number gain	IS34051	SNP array	SNP genotyping analysis	16
nssv1589932	copy number gain	IS38430	SNP array	SNP genotyping analysis	34

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1544314	Remapped	Perfect	NC_000016.10:g.(89 145792_89166060)_( 89197443_89207475) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	89,145,792	89,166,060	89,197,443	89,207,475
nssv1576387	Remapped	Perfect	NC_000016.10:g.(89 145792_89166060)_( 89197443_89207475) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	89,145,792	89,166,060	89,197,443	89,207,475
nssv1589932	Remapped	Perfect	NC_000016.10:g.(89 145792_89166060)_( 89197443_89207475) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	89,145,792	89,166,060	89,197,443	89,207,475
nssv1544314	Remapped	Perfect	NC_000016.9:g.(892 12200_89232468)_(8 9263851_89273883)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,212,200	89,232,468	89,263,851	89,273,883
nssv1576387	Remapped	Perfect	NC_000016.9:g.(892 12200_89232468)_(8 9263851_89273883)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,212,200	89,232,468	89,263,851	89,273,883
nssv1589932	Remapped	Perfect	NC_000016.9:g.(892 12200_89232468)_(8 9263851_89273883)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,212,200	89,232,468	89,263,851	89,273,883
nssv1544314	Submitted genomic		NC_000016.8:g.(877 39701_87759969)_(8 7791352_87801384)d el	NCBI36 (hg18)		NC_000016.8	Chr16	87,739,701	87,759,969	87,791,352	87,801,384
nssv1576387	Submitted genomic		NC_000016.8:g.(877 39701_87759969)_(8 7791352_87801384)d up	NCBI36 (hg18)		NC_000016.8	Chr16	87,739,701	87,759,969	87,791,352	87,801,384
nssv1589932	Submitted genomic		NC_000016.8:g.(877 39701_87759969)_(8 7791352_87801384)d up	NCBI36 (hg18)		NC_000016.8	Chr16	87,739,701	87,759,969	87,791,352	87,801,384

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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