nsv907953
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:595,298
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1876 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1523 SVs from 88 studies. See in: genome view
Overlapping variant regions from other studies: 545 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv907953 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nsv907953 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nsv907953 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535609 | copy number gain | MS12281 | SNP array | SNP genotyping analysis | 14 |
| nssv1584604 | copy number gain | IS37068 | SNP array | SNP genotyping analysis | 14 |
| nssv1590073 | copy number gain | IS38455 | SNP array | SNP genotyping analysis | 14 |
| nssv1597213 | copy number gain | IS40769 | SNP array | SNP genotyping analysis | 11 |
| nssv1598863 | copy number gain | IS40812 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535609 | Remapped | Good | NC_000017.11:g.(22 159206_22159206)_( 22754503_22754503) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nssv1584604 | Remapped | Good | NC_000017.11:g.(22 159206_22159206)_( 22754503_22754503) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nssv1590073 | Remapped | Good | NC_000017.11:g.(22 159206_22159206)_( 22754503_22754503) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nssv1597213 | Remapped | Good | NC_000017.11:g.(22 159206_22159206)_( 22754503_22754503) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nssv1598863 | Remapped | Good | NC_000017.11:g.(22 159206_22159206)_( 22754503_22754503) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 22,159,206 | 22,159,206 | 22,754,503 | 22,754,503 |
| nssv1535609 | Remapped | Pass | NC_000017.10:g.(21 685812_21685812)_( 22174114_?)dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nssv1584604 | Remapped | Pass | NC_000017.10:g.(21 685812_21685812)_( 22174114_?)dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nssv1590073 | Remapped | Pass | NC_000017.10:g.(21 685812_21685812)_( 22174114_?)dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nssv1597213 | Remapped | Pass | NC_000017.10:g.(21 685812_21685812)_( 22174114_?)dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nssv1598863 | Remapped | Pass | NC_000017.10:g.(21 685812_21685812)_( 22174114_?)dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 21,685,812 | 21,685,812 | 22,174,114 | - |
| nssv1535609 | Submitted genomic | NC_000017.9:g.(216 09936_21621598)_(2 2166482_22177957)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 | ||
| nssv1584604 | Submitted genomic | NC_000017.9:g.(216 09936_21621598)_(2 2166482_22177957)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 | ||
| nssv1590073 | Submitted genomic | NC_000017.9:g.(216 09936_21621598)_(2 2166482_22177957)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 | ||
| nssv1597213 | Submitted genomic | NC_000017.9:g.(216 09936_21621598)_(2 2166482_22177957)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 | ||
| nssv1598863 | Submitted genomic | NC_000017.9:g.(216 09936_21621598)_(2 2166482_22177957)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 21,609,936 | 21,621,598 | 22,166,482 | 22,177,957 |