Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv908386

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:186,469

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1564 SVs from 86 studies. See in: genome view

Remapped(Score: Good):46,342,566-46,529,034

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv908386	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	46,342,566	46,342,566	46,529,034	46,529,034
nsv908386	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	44,419,932	44,419,932	44,606,400	44,606,400
nsv908386	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000017.9	Chr17	41,775,690	41,780,482	41,959,321	41,961,716

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1531516	copy number loss	MS10515	SNP array	SNP genotyping analysis	8
nssv1549477	copy number gain	MS18248	SNP array	SNP genotyping analysis	12
nssv1557171	copy number gain	MS22453	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1531516	Remapped	Good	NC_000017.11:g.(46 342566_46342566)_( 46529034_46529034) del	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,342,566	46,342,566	46,529,034	46,529,034
nssv1549477	Remapped	Good	NC_000017.11:g.(46 342566_46342566)_( 46529034_46529034) dup	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,342,566	46,342,566	46,529,034	46,529,034
nssv1557171	Remapped	Good	NC_000017.11:g.(46 342566_46342566)_( 46529034_46529034) dup	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,342,566	46,342,566	46,529,034	46,529,034
nssv1531516	Remapped	Good	NC_000017.10:g.(44 419932_44419932)_( 44606400_44606400) del	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,419,932	44,419,932	44,606,400	44,606,400
nssv1549477	Remapped	Good	NC_000017.10:g.(44 419932_44419932)_( 44606400_44606400) dup	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,419,932	44,419,932	44,606,400	44,606,400
nssv1557171	Remapped	Good	NC_000017.10:g.(44 419932_44419932)_( 44606400_44606400) dup	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,419,932	44,419,932	44,606,400	44,606,400
nssv1531516	Submitted genomic		NC_000017.9:g.(417 75690_41780482)_(4 1959321_41961716)d el	NCBI36 (hg18)		NC_000017.9	Chr17	41,775,690	41,780,482	41,959,321	41,961,716
nssv1549477	Submitted genomic		NC_000017.9:g.(417 75690_41780482)_(4 1959321_41961716)d up	NCBI36 (hg18)		NC_000017.9	Chr17	41,775,690	41,780,482	41,959,321	41,961,716
nssv1557171	Submitted genomic		NC_000017.9:g.(417 75690_41780482)_(4 1959321_41961716)d up	NCBI36 (hg18)		NC_000017.9	Chr17	41,775,690	41,780,482	41,959,321	41,961,716

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI