nsv908442
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:119,251
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1354 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 297 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 1428 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 890 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv908442 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 46,355,489 | 46,355,489 | 46,474,739 | 46,474,739 |
| nsv908442 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_2 | First Pass | NT_187663.1 | Chr17|NT_1 87663.1 | - | 1,118,390 | 1,181,521 | - |
| nsv908442 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 44,432,855 | 44,432,855 | 44,552,105 | 44,552,105 |
| nsv908442 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 41,788,595 | 41,792,236 | 41,902,289 | 41,907,421 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535683 | copy number loss | MS12387 | SNP array | SNP genotyping analysis | 14 |
| nssv1536153 | copy number loss | MS12640 | SNP array | SNP genotyping analysis | 15 |
| nssv1540959 | copy number loss | MS15102 | SNP array | SNP genotyping analysis | 6 |
| nssv1545474 | copy number loss | MS16801 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535683 | Remapped | Pass | NT_187663.1:g.(?_1 118390)_(1181521_? )del | GRCh38.p12 | First Pass | NT_187663.1 | Chr17|NT_1 87663.1 | - | 1,118,390 | 1,181,521 | - |
| nssv1536153 | Remapped | Pass | NT_187663.1:g.(?_1 118390)_(1181521_? )del | GRCh38.p12 | First Pass | NT_187663.1 | Chr17|NT_1 87663.1 | - | 1,118,390 | 1,181,521 | - |
| nssv1540959 | Remapped | Pass | NT_187663.1:g.(?_1 118390)_(1181521_? )del | GRCh38.p12 | First Pass | NT_187663.1 | Chr17|NT_1 87663.1 | - | 1,118,390 | 1,181,521 | - |
| nssv1545474 | Remapped | Pass | NT_187663.1:g.(?_1 118390)_(1181521_? )del | GRCh38.p12 | First Pass | NT_187663.1 | Chr17|NT_1 87663.1 | - | 1,118,390 | 1,181,521 | - |
| nssv1535683 | Remapped | Good | NC_000017.11:g.(46 355489_46355489)_( 46474739_46474739) del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,355,489 | 46,355,489 | 46,474,739 | 46,474,739 |
| nssv1536153 | Remapped | Good | NC_000017.11:g.(46 355489_46355489)_( 46474739_46474739) del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,355,489 | 46,355,489 | 46,474,739 | 46,474,739 |
| nssv1540959 | Remapped | Good | NC_000017.11:g.(46 355489_46355489)_( 46474739_46474739) del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,355,489 | 46,355,489 | 46,474,739 | 46,474,739 |
| nssv1545474 | Remapped | Good | NC_000017.11:g.(46 355489_46355489)_( 46474739_46474739) del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,355,489 | 46,355,489 | 46,474,739 | 46,474,739 |
| nssv1535683 | Remapped | Good | NC_000017.10:g.(44 432855_44432855)_( 44552105_44552105) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,432,855 | 44,432,855 | 44,552,105 | 44,552,105 |
| nssv1536153 | Remapped | Good | NC_000017.10:g.(44 432855_44432855)_( 44552105_44552105) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,432,855 | 44,432,855 | 44,552,105 | 44,552,105 |
| nssv1540959 | Remapped | Good | NC_000017.10:g.(44 432855_44432855)_( 44552105_44552105) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,432,855 | 44,432,855 | 44,552,105 | 44,552,105 |
| nssv1545474 | Remapped | Good | NC_000017.10:g.(44 432855_44432855)_( 44552105_44552105) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,432,855 | 44,432,855 | 44,552,105 | 44,552,105 |
| nssv1535683 | Submitted genomic | NC_000017.9:g.(417 88595_41792236)_(4 1902289_41907421)d el | NCBI36 (hg18) | NC_000017.9 | Chr17 | 41,788,595 | 41,792,236 | 41,902,289 | 41,907,421 | ||
| nssv1536153 | Submitted genomic | NC_000017.9:g.(417 88595_41792236)_(4 1902289_41907421)d el | NCBI36 (hg18) | NC_000017.9 | Chr17 | 41,788,595 | 41,792,236 | 41,902,289 | 41,907,421 | ||
| nssv1540959 | Submitted genomic | NC_000017.9:g.(417 88595_41792236)_(4 1902289_41907421)d el | NCBI36 (hg18) | NC_000017.9 | Chr17 | 41,788,595 | 41,792,236 | 41,902,289 | 41,907,421 | ||
| nssv1545474 | Submitted genomic | NC_000017.9:g.(417 88595_41792236)_(4 1902289_41907421)d el | NCBI36 (hg18) | NC_000017.9 | Chr17 | 41,788,595 | 41,792,236 | 41,902,289 | 41,907,421 |