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dbVar

Database of genomic structural variation

nsv908534

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:129,817

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1482 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):46,530,352-46,660,168

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv908534	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	46,530,352	46,546,266	46,610,400	46,660,168
nsv908534	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	44,607,718	44,623,632	44,687,766	44,737,534
nsv908534	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000017.9	Chr17	41,963,034	41,978,948	42,043,082	42,092,850

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1529632	copy number gain	MS10094	SNP array	SNP genotyping analysis	10
nssv1544798	copy number loss	MS16506	SNP array	SNP genotyping analysis	14
nssv1551892	copy number loss	MS19003	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1529632	Remapped	Perfect	NC_000017.11:g.(46 530352_46546266)_( 46610400_46660168) dup	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,530,352	46,546,266	46,610,400	46,660,168
nssv1544798	Remapped	Perfect	NC_000017.11:g.(46 530352_46546266)_( 46610400_46660168) del	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,530,352	46,546,266	46,610,400	46,660,168
nssv1551892	Remapped	Perfect	NC_000017.11:g.(46 530352_46546266)_( 46610400_46660168) del	GRCh38.p12	First Pass	NC_000017.11	Chr17	46,530,352	46,546,266	46,610,400	46,660,168
nssv1529632	Remapped	Perfect	NC_000017.10:g.(44 607718_44623632)_( 44687766_44737534) dup	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,607,718	44,623,632	44,687,766	44,737,534
nssv1544798	Remapped	Perfect	NC_000017.10:g.(44 607718_44623632)_( 44687766_44737534) del	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,607,718	44,623,632	44,687,766	44,737,534
nssv1551892	Remapped	Perfect	NC_000017.10:g.(44 607718_44623632)_( 44687766_44737534) del	GRCh37.p13	First Pass	NC_000017.10	Chr17	44,607,718	44,623,632	44,687,766	44,737,534
nssv1529632	Submitted genomic		NC_000017.9:g.(419 63034_41978948)_(4 2043082_42092850)d up	NCBI36 (hg18)		NC_000017.9	Chr17	41,963,034	41,978,948	42,043,082	42,092,850
nssv1544798	Submitted genomic		NC_000017.9:g.(419 63034_41978948)_(4 2043082_42092850)d el	NCBI36 (hg18)		NC_000017.9	Chr17	41,963,034	41,978,948	42,043,082	42,092,850
nssv1551892	Submitted genomic		NC_000017.9:g.(419 63034_41978948)_(4 2043082_42092850)d el	NCBI36 (hg18)		NC_000017.9	Chr17	41,963,034	41,978,948	42,043,082	42,092,850

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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