nsv908556
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:132,244
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1444 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 1437 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 912 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv908556 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nsv908556 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nsv908556 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1563718 | copy number gain | IS30051 | SNP array | SNP genotyping analysis | 15 |
| nssv1566527 | copy number gain | IS30766 | SNP array | SNP genotyping analysis | 11 |
| nssv1577743 | copy number gain | IS34543 | SNP array | SNP genotyping analysis | 21 |
| nssv1588614 | copy number gain | IS38220 | SNP array | SNP genotyping analysis | 19 |
| nssv1591624 | copy number gain | IS39009 | SNP array | SNP genotyping analysis | 9 |
| nssv1593107 | copy number gain | IS39356 | SNP array | SNP genotyping analysis | 13 |
| nssv1595028 | copy number gain | IS40068 | SNP array | SNP genotyping analysis | 8 |
| nssv1599820 | copy number gain | IS41795 | SNP array | SNP genotyping analysis | 13 |
| nssv1599842 | copy number gain | IS41801 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1563718 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1566527 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1577743 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1588614 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1591624 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1593107 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1595028 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1599820 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1599842 | Remapped | Good | NC_000017.11:g.(46 572568_46572568)_( 46704811_46704811) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 46,572,568 | 46,572,568 | 46,704,811 | 46,704,811 |
| nssv1563718 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1566527 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1577743 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1588614 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1591624 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1593107 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1595028 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1599820 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1599842 | Remapped | Good | NC_000017.10:g.(44 649934_44649934)_( 44782177_44782177) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 44,649,934 | 44,649,934 | 44,782,177 | 44,782,177 |
| nssv1563718 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1566527 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1577743 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1588614 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1591624 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1593107 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1595028 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1599820 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 | ||
| nssv1599842 | Submitted genomic | NC_000017.9:g.(420 05250_42008822)_(4 2092850_42137359)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 42,005,250 | 42,008,822 | 42,092,850 | 42,137,359 |