nsv908940
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,046
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 438 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 434 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 174 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv908940 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 79,371,910 | 79,372,486 | 79,397,520 | 79,397,955 |
| nsv908940 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 77,367,992 | 77,368,568 | 77,393,602 | 77,394,037 |
| nsv908940 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 74,879,587 | 74,880,163 | 74,905,197 | 74,905,632 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1563514 | copy number gain | MS26069 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1563514 | Remapped | Perfect | NC_000017.11:g.(79 371910_79372486)_( 79397520_79397955) dup | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 79,371,910 | 79,372,486 | 79,397,520 | 79,397,955 |
| nssv1563514 | Remapped | Perfect | NC_000017.10:g.(77 367992_77368568)_( 77393602_77394037) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 77,367,992 | 77,368,568 | 77,393,602 | 77,394,037 |
| nssv1563514 | Submitted genomic | NC_000017.9:g.(748 79587_74880163)_(7 4905197_74905632)d up | NCBI36 (hg18) | NC_000017.9 | Chr17 | 74,879,587 | 74,880,163 | 74,905,197 | 74,905,632 |