nsv909826
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,374
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1099 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1099 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 555 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv909826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nsv909826 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nsv909826 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531154 | copy number gain | MS10351 | SNP array | SNP genotyping analysis | 13 |
| nssv1539856 | copy number gain | MS14522 | SNP array | SNP genotyping analysis | 15 |
| nssv1541266 | copy number gain | MS15216 | SNP array | SNP genotyping analysis | 8 |
| nssv1560848 | copy number gain | MS24733 | SNP array | SNP genotyping analysis | 6 |
| nssv1572485 | copy number gain | IS33073 | SNP array | SNP genotyping analysis | 18 |
| nssv1580187 | copy number loss | IS35236 | SNP array | SNP genotyping analysis | 31 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531154 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1539856 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1541266 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1560848 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1572485 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1580187 | Remapped | Perfect | NC_000018.10:g.(69 071844_69074209)_( 69084931_69085217) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,071,844 | 69,074,209 | 69,084,931 | 69,085,217 |
| nssv1531154 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1539856 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1541266 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1560848 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1572485 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1580187 | Remapped | Perfect | NC_000018.9:g.(667 39081_66741446)_(6 6752168_66752454)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,739,081 | 66,741,446 | 66,752,168 | 66,752,454 |
| nssv1531154 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 | ||
| nssv1539856 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 | ||
| nssv1541266 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 | ||
| nssv1560848 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 | ||
| nssv1572485 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 | ||
| nssv1580187 | Submitted genomic | NC_000018.8:g.(648 90061_64892426)_(6 4903148_64903434)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 64,890,061 | 64,892,426 | 64,903,148 | 64,903,434 |