nsv909870
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:675,997
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2645 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 2645 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 876 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv909870 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 71,020,513 | 71,023,450 | 71,694,225 | 71,696,509 |
| nsv909870 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 68,687,749 | 68,690,686 | 69,361,461 | 69,363,745 |
| nsv909870 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 66,838,729 | 66,841,666 | 67,512,441 | 67,514,725 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1589963 | copy number gain | IS38436 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1589963 | Remapped | Perfect | NC_000018.10:g.(71 020513_71023450)_( 71694225_71696509) dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 71,020,513 | 71,023,450 | 71,694,225 | 71,696,509 |
| nssv1589963 | Remapped | Perfect | NC_000018.9:g.(686 87749_68690686)_(6 9361461_69363745)d up | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 68,687,749 | 68,690,686 | 69,361,461 | 69,363,745 |
| nssv1589963 | Submitted genomic | NC_000018.8:g.(668 38729_66841666)_(6 7512441_67514725)d up | NCBI36 (hg18) | NC_000018.8 | Chr18 | 66,838,729 | 66,841,666 | 67,512,441 | 67,514,725 |