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dbVar

Database of genomic structural variation

nsv910228

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:51,682

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 543 SVs from 70 studies. See in: genome view

Remapped(Score: Perfect):605,985-657,666

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv910228	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	605,985	613,898	651,852	657,666
nsv910228	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	605,985	613,898	651,852	657,666
nsv910228	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000019.8	Chr19	556,985	564,898	602,852	608,666

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1533138	copy number loss	MS11022	SNP array	SNP genotyping analysis	16
nssv1572248	copy number loss	IS32894	SNP array	SNP genotyping analysis	10
nssv1581577	copy number gain	IS35633	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1533138	Remapped	Perfect	NC_000019.10:g.(60 5985_613898)_(6518 52_657666)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	605,985	613,898	651,852	657,666
nssv1572248	Remapped	Perfect	NC_000019.10:g.(60 5985_613898)_(6518 52_657666)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	605,985	613,898	651,852	657,666
nssv1581577	Remapped	Perfect	NC_000019.10:g.(60 5985_613898)_(6518 52_657666)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	605,985	613,898	651,852	657,666
nssv1533138	Remapped	Perfect	NC_000019.9:g.(605 985_613898)_(65185 2_657666)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	605,985	613,898	651,852	657,666
nssv1572248	Remapped	Perfect	NC_000019.9:g.(605 985_613898)_(65185 2_657666)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	605,985	613,898	651,852	657,666
nssv1581577	Remapped	Perfect	NC_000019.9:g.(605 985_613898)_(65185 2_657666)dup	GRCh37.p13	First Pass	NC_000019.9	Chr19	605,985	613,898	651,852	657,666
nssv1533138	Submitted genomic		NC_000019.8:g.(556 985_564898)_(60285 2_608666)del	NCBI36 (hg18)		NC_000019.8	Chr19	556,985	564,898	602,852	608,666
nssv1572248	Submitted genomic		NC_000019.8:g.(556 985_564898)_(60285 2_608666)del	NCBI36 (hg18)		NC_000019.8	Chr19	556,985	564,898	602,852	608,666
nssv1581577	Submitted genomic		NC_000019.8:g.(556 985_564898)_(60285 2_608666)dup	NCBI36 (hg18)		NC_000019.8	Chr19	556,985	564,898	602,852	608,666

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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