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dbVar

Database of genomic structural variation

nsv910512

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:132,155

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 962 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):1,448,181-1,580,335

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv910512	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	1,448,181	1,475,392	1,572,370	1,580,335
nsv910512	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	1,448,180	1,475,391	1,572,369	1,580,334
nsv910512	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000019.8	Chr19	1,399,180	1,426,391	1,523,369	1,531,334

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1566514	copy number loss	IS30764	SNP array	SNP genotyping analysis	19
nssv1587491	copy number loss	IS38057	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1566514	Remapped	Perfect	NC_000019.10:g.(14 48181_1475392)_(15 72370_1580335)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	1,448,181	1,475,392	1,572,370	1,580,335
nssv1587491	Remapped	Perfect	NC_000019.10:g.(14 48181_1475392)_(15 72370_1580335)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	1,448,181	1,475,392	1,572,370	1,580,335
nssv1566514	Remapped	Perfect	NC_000019.9:g.(144 8180_1475391)_(157 2369_1580334)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	1,448,180	1,475,391	1,572,369	1,580,334
nssv1587491	Remapped	Perfect	NC_000019.9:g.(144 8180_1475391)_(157 2369_1580334)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	1,448,180	1,475,391	1,572,369	1,580,334
nssv1566514	Submitted genomic		NC_000019.8:g.(139 9180_1426391)_(152 3369_1531334)del	NCBI36 (hg18)		NC_000019.8	Chr19	1,399,180	1,426,391	1,523,369	1,531,334
nssv1587491	Submitted genomic		NC_000019.8:g.(139 9180_1426391)_(152 3369_1531334)del	NCBI36 (hg18)		NC_000019.8	Chr19	1,399,180	1,426,391	1,523,369	1,531,334

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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