nsv911074
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:39,550
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 354 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 354 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 125 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv911074 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 12,398,722 | 12,405,336 | 12,437,680 | 12,438,271 |
| nsv911074 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 12,509,536 | 12,516,150 | 12,548,494 | 12,549,085 |
| nsv911074 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 12,370,536 | 12,377,150 | 12,409,494 | 12,410,085 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531793 | copy number loss | MS10658 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531793 | Remapped | Perfect | NC_000019.10:g.(12 398722_12405336)_( 12437680_12438271) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 12,398,722 | 12,405,336 | 12,437,680 | 12,438,271 |
| nssv1531793 | Remapped | Perfect | NC_000019.9:g.(125 09536_12516150)_(1 2548494_12549085)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 12,509,536 | 12,516,150 | 12,548,494 | 12,549,085 |
| nssv1531793 | Submitted genomic | NC_000019.8:g.(123 70536_12377150)_(1 2409494_12410085)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 12,370,536 | 12,377,150 | 12,409,494 | 12,410,085 |