nsv911433
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:74,053
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 348 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 348 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 94 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv911433 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 21,853,365 | 21,857,760 | 21,924,149 | 21,927,417 |
| nsv911433 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 22,036,167 | 22,040,562 | 22,106,951 | 22,110,219 |
| nsv911433 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 21,828,007 | 21,832,402 | 21,898,791 | 21,902,059 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536461 | copy number loss | MS12791 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536461 | Remapped | Perfect | NC_000019.10:g.(21 853365_21857760)_( 21924149_21927417) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 21,853,365 | 21,857,760 | 21,924,149 | 21,927,417 |
| nssv1536461 | Remapped | Perfect | NC_000019.9:g.(220 36167_22040562)_(2 2106951_22110219)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 22,036,167 | 22,040,562 | 22,106,951 | 22,110,219 |
| nssv1536461 | Submitted genomic | NC_000019.8:g.(218 28007_21832402)_(2 1898791_21902059)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 21,828,007 | 21,832,402 | 21,898,791 | 21,902,059 |