nsv911533
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:204,089
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1544 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 1544 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 660 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv911533 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 27,371,087 | 27,402,753 | 27,563,222 | 27,575,175 |
| nsv911533 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 27,861,995 | 27,893,661 | 28,054,130 | 28,066,083 |
| nsv911533 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 32,553,835 | 32,585,501 | 32,745,970 | 32,757,923 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566371 | copy number loss | IS30669 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566371 | Remapped | Perfect | NC_000019.10:g.(27 371087_27402753)_( 27563222_27575175) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 27,371,087 | 27,402,753 | 27,563,222 | 27,575,175 |
| nssv1566371 | Remapped | Perfect | NC_000019.9:g.(278 61995_27893661)_(2 8054130_28066083)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 27,861,995 | 27,893,661 | 28,054,130 | 28,066,083 |
| nssv1566371 | Submitted genomic | NC_000019.8:g.(325 53835_32585501)_(3 2745970_32757923)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 32,553,835 | 32,585,501 | 32,745,970 | 32,757,923 |