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dbVar

Database of genomic structural variation

nsv911601

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:38,551

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 199 SVs from 36 studies. See in: genome view

Remapped(Score: Perfect):33,385,488-33,424,038

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv911601	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	33,385,488	33,387,931	33,418,945	33,424,038
nsv911601	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	33,876,394	33,878,837	33,909,851	33,914,944
nsv911601	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000019.8	Chr19	38,568,234	38,570,677	38,601,691	38,606,784

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1580963	copy number loss	IS35484	SNP array	SNP genotyping analysis	201
nssv1584132	copy number loss	IS36876	SNP array	SNP genotyping analysis	24
nssv1586837	copy number loss	IS37985	SNP array	SNP genotyping analysis	57
nssv1588276	copy number loss	IS38176	SNP array	SNP genotyping analysis	145

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1580963	Remapped	Perfect	NC_000019.10:g.(33 385488_33387931)_( 33418945_33424038) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	33,385,488	33,387,931	33,418,945	33,424,038
nssv1584132	Remapped	Perfect	NC_000019.10:g.(33 385488_33387931)_( 33418945_33424038) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	33,385,488	33,387,931	33,418,945	33,424,038
nssv1586837	Remapped	Perfect	NC_000019.10:g.(33 385488_33387931)_( 33418945_33424038) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	33,385,488	33,387,931	33,418,945	33,424,038
nssv1588276	Remapped	Perfect	NC_000019.10:g.(33 385488_33387931)_( 33418945_33424038) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	33,385,488	33,387,931	33,418,945	33,424,038
nssv1580963	Remapped	Perfect	NC_000019.9:g.(338 76394_33878837)_(3 3909851_33914944)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	33,876,394	33,878,837	33,909,851	33,914,944
nssv1584132	Remapped	Perfect	NC_000019.9:g.(338 76394_33878837)_(3 3909851_33914944)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	33,876,394	33,878,837	33,909,851	33,914,944
nssv1586837	Remapped	Perfect	NC_000019.9:g.(338 76394_33878837)_(3 3909851_33914944)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	33,876,394	33,878,837	33,909,851	33,914,944
nssv1588276	Remapped	Perfect	NC_000019.9:g.(338 76394_33878837)_(3 3909851_33914944)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	33,876,394	33,878,837	33,909,851	33,914,944
nssv1580963	Submitted genomic		NC_000019.8:g.(385 68234_38570677)_(3 8601691_38606784)d el	NCBI36 (hg18)		NC_000019.8	Chr19	38,568,234	38,570,677	38,601,691	38,606,784
nssv1584132	Submitted genomic		NC_000019.8:g.(385 68234_38570677)_(3 8601691_38606784)d el	NCBI36 (hg18)		NC_000019.8	Chr19	38,568,234	38,570,677	38,601,691	38,606,784
nssv1586837	Submitted genomic		NC_000019.8:g.(385 68234_38570677)_(3 8601691_38606784)d el	NCBI36 (hg18)		NC_000019.8	Chr19	38,568,234	38,570,677	38,601,691	38,606,784
nssv1588276	Submitted genomic		NC_000019.8:g.(385 68234_38570677)_(3 8601691_38606784)d el	NCBI36 (hg18)		NC_000019.8	Chr19	38,568,234	38,570,677	38,601,691	38,606,784

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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