nsv911736

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:21
Validation:Not tested
Clinical Assertions: No
Region Size:15,163

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 807 SVs from 81 studies. See in: genome view

Remapped(Score: Perfect):40,835,684-40,850,846

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv911736	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nsv911736	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nsv911736	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522111	copy number loss	SP52724	SNP array	SNP genotyping analysis	10
nssv1526332	copy number loss	SP57174	SNP array	SNP genotyping analysis	12
nssv1526658	copy number loss	SP57700	SNP array	SNP genotyping analysis	13
nssv1527507	copy number loss	SP58480	SNP array	SNP genotyping analysis	12
nssv1528572	copy number loss	SP81273	SNP array	SNP genotyping analysis	10
nssv1529513	copy number loss	SP81560	SNP array	SNP genotyping analysis	11
nssv1530139	copy number loss	MS10204	SNP array	SNP genotyping analysis	23
nssv1533690	copy number loss	MS11273	SNP array	SNP genotyping analysis	8
nssv1535697	copy number loss	MS12398	SNP array	SNP genotyping analysis	9
nssv1537456	copy number loss	MS13211	SNP array	SNP genotyping analysis	15
nssv1537691	copy number loss	MS13293	SNP array	SNP genotyping analysis	9
nssv1539122	copy number loss	MS14209	SNP array	SNP genotyping analysis	9
nssv1543318	copy number loss	MS16137	SNP array	SNP genotyping analysis	14
nssv1545756	copy number loss	MS16934	SNP array	SNP genotyping analysis	15
nssv1545868	copy number loss	MS17014	SNP array	SNP genotyping analysis	10
nssv1554318	copy number loss	MS20718	SNP array	SNP genotyping analysis	8
nssv1559367	copy number loss	MS23889	SNP array	SNP genotyping analysis	12
nssv1562167	copy number loss	MS25412	SNP array	SNP genotyping analysis	9
nssv1562777	copy number loss	MS25745	SNP array	SNP genotyping analysis	8
nssv1593047	copy number loss	IS39343	SNP array	SNP genotyping analysis	5
nssv1593864	copy number loss	IS39530	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522111	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1526332	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1526658	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1527507	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1528572	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1529513	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1530139	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1533690	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1535697	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1537456	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1537691	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1539122	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1543318	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1545756	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1545868	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1554318	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1559367	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1562167	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1562777	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1593047	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1593864	Remapped	Perfect	NC_000019.10:g.(40 835684_40843827)_( 40850594_40850846) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,835,684	40,843,827	40,850,594	40,850,846
nssv1522111	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1526332	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1526658	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1527507	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1528572	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1529513	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1530139	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1533690	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1535697	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1537456	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1537691	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1539122	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1543318	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1545756	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1545868	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1554318	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1559367	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1562167	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1562777	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1593047	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1593864	Remapped	Perfect	NC_000019.9:g.(413 41589_41349732)_(4 1356499_41356751)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,341,589	41,349,732	41,356,499	41,356,751
nssv1522111	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1526332	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1526658	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1527507	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1528572	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1529513	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1530139	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1533690	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1535697	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1537456	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1537691	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1539122	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1543318	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1545756	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1545868	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1554318	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1559367	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1562167	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1562777	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1593047	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591
nssv1593864	Submitted genomic		NC_000019.8:g.(460 33429_46041572)_(4 6048339_46048591)d el	NCBI36 (hg18)		NC_000019.8	Chr19	46,033,429	46,041,572	46,048,339	46,048,591

dbVar

Database of genomic structural variation

nsv911736

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant