nsv911820

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:15
Validation:Not tested
Clinical Assertions: No
Region Size:125,181

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2003 SVs from 98 studies. See in: genome view

Remapped(Score: Perfect):42,786,111-42,911,291

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv911820	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nsv911820	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nsv911820	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1525315	copy number loss	SP56410	SNP array	SNP genotyping analysis	7
nssv1525605	copy number loss	SP56728	SNP array	SNP genotyping analysis	9
nssv1529266	copy number loss	SP81495	SNP array	SNP genotyping analysis	14
nssv1536886	copy number loss	MS13002	SNP array	SNP genotyping analysis	9
nssv1537239	copy number loss	MS13131	SNP array	SNP genotyping analysis	7
nssv1541660	copy number loss	MS15410	SNP array	SNP genotyping analysis	6
nssv1550679	copy number loss	MS18537	SNP array	SNP genotyping analysis	8
nssv1556960	copy number gain	MS22297	SNP array	SNP genotyping analysis	13
nssv1563205	copy number loss	MS25901	SNP array	SNP genotyping analysis	9
nssv1564781	copy number loss	IS30297	SNP array	SNP genotyping analysis	7
nssv1571297	copy number loss	IS32679	SNP array	SNP genotyping analysis	10
nssv1572518	copy number loss	IS33115	SNP array	SNP genotyping analysis	14
nssv1578524	copy number loss	IS34803	SNP array	SNP genotyping analysis	13
nssv1583174	copy number loss	IS36312	SNP array	SNP genotyping analysis	9
nssv1598698	copy number loss	IS40831	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1525315	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1525605	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1529266	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1536886	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1537239	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1541660	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1550679	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1556960	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1563205	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1564781	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1571297	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1572518	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1578524	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1583174	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1598698	Remapped	Perfect	NC_000019.10:g.(42 786111_42802004)_( 42898024_42911291) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,786,111	42,802,004	42,898,024	42,911,291
nssv1525315	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1525605	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1529266	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1536886	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1537239	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1541660	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1550679	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1556960	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d up	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1563205	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1564781	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1571297	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1572518	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1578524	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1583174	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1598698	Remapped	Perfect	NC_000019.9:g.(432 90263_43306156)_(4 3402176_43415443)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	43,290,263	43,306,156	43,402,176	43,415,443
nssv1525315	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1525605	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1529266	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1536886	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1537239	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1541660	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1550679	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1556960	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d up	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1563205	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1564781	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1571297	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1572518	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1578524	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1583174	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283
nssv1598698	Submitted genomic		NC_000019.8:g.(479 82103_47997996)_(4 8094016_48107283)d el	NCBI36 (hg18)		NC_000019.8	Chr19	47,982,103	47,997,996	48,094,016	48,107,283

dbVar

Database of genomic structural variation

nsv911820

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant