nsv911830
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:248,927
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2832 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 2831 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 844 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv911830 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nsv911830 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nsv911830 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522690 | copy number loss | SP53344 | SNP array | SNP genotyping analysis | 7 |
| nssv1524209 | copy number loss | SP54913 | SNP array | SNP genotyping analysis | 14 |
| nssv1525643 | copy number loss | SP56750 | SNP array | SNP genotyping analysis | 11 |
| nssv1525654 | copy number loss | SP56757 | SNP array | SNP genotyping analysis | 12 |
| nssv1530289 | copy number loss | MS10296 | SNP array | SNP genotyping analysis | 76 |
| nssv1533492 | copy number loss | MS11204 | SNP array | SNP genotyping analysis | 9 |
| nssv1539007 | copy number loss | MS13957 | SNP array | SNP genotyping analysis | 13 |
| nssv1539982 | copy number loss | MS14637 | SNP array | SNP genotyping analysis | 17 |
| nssv1540475 | copy number loss | MS14851 | SNP array | SNP genotyping analysis | 7 |
| nssv1541052 | copy number loss | MS15175 | SNP array | SNP genotyping analysis | 11 |
| nssv1541234 | copy number loss | MS15199 | SNP array | SNP genotyping analysis | 167 |
| nssv1555118 | copy number loss | MS21194 | SNP array | SNP genotyping analysis | 15 |
| nssv1556942 | copy number loss | MS22279 | SNP array | SNP genotyping analysis | 12 |
| nssv1559874 | copy number loss | MS24193 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522690 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1524209 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1525643 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1525654 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1530289 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1533492 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1539007 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1539982 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1540475 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1541052 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1541234 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1555118 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1556942 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1559874 | Remapped | Perfect | NC_000019.10:g.(42 786111_42802004)_( 43017522_43035037) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,786,111 | 42,802,004 | 43,017,522 | 43,035,037 |
| nssv1522690 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1524209 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1525643 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1525654 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1530289 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1533492 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1539007 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1539982 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1540475 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1541052 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1541234 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1555118 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1556942 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1559874 | Remapped | Perfect | NC_000019.9:g.(432 90263_43306156)_(4 3521674_43539189)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,290,263 | 43,306,156 | 43,521,674 | 43,539,189 |
| nssv1522690 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1524209 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1525643 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1525654 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1530289 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1533492 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1539007 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1539982 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1540475 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1541052 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1541234 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1555118 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1556942 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 | ||
| nssv1559874 | Submitted genomic | NC_000019.8:g.(479 82103_47997996)_(4 8213514_48231029)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,982,103 | 47,997,996 | 48,213,514 | 48,231,029 |