nsv911881
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:181,720
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2579 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 2578 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 806 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv911881 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nsv911881 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nsv911881 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522949 | copy number loss | SP53516 | SNP array | SNP genotyping analysis | 12 |
| nssv1524662 | copy number loss | SP55150 | SNP array | SNP genotyping analysis | 8 |
| nssv1524960 | copy number loss | SP55407 | SNP array | SNP genotyping analysis | 12 |
| nssv1547502 | copy number loss | MS17400 | SNP array | SNP genotyping analysis | 9 |
| nssv1548009 | copy number loss | MS17677 | SNP array | SNP genotyping analysis | 12 |
| nssv1548238 | copy number loss | MS17760 | SNP array | SNP genotyping analysis | 7 |
| nssv1551581 | copy number loss | MS18946 | SNP array | SNP genotyping analysis | 11 |
| nssv1578156 | copy number loss | IS34698 | SNP array | SNP genotyping analysis | 14 |
| nssv1580008 | copy number loss | IS35219 | SNP array | SNP genotyping analysis | 7 |
| nssv1597026 | copy number loss | IS40707 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522949 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1524662 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1524960 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1547502 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1548009 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1548238 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1551581 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1578156 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1580008 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1597026 | Remapped | Perfect | NC_000019.10:g.(42 835803_42843934)_( 43009507_43017522) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,835,803 | 42,843,934 | 43,009,507 | 43,017,522 |
| nssv1522949 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1524662 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1524960 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1547502 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1548009 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1548238 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1551581 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1578156 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1580008 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1597026 | Remapped | Perfect | NC_000019.9:g.(433 39955_43348086)_(4 3513659_43521674)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 43,339,955 | 43,348,086 | 43,513,659 | 43,521,674 |
| nssv1522949 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1524662 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1524960 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1547502 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1548009 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1548238 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1551581 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1578156 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1580008 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 | ||
| nssv1597026 | Submitted genomic | NC_000019.8:g.(480 31795_48039926)_(4 8205499_48213514)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 48,031,795 | 48,039,926 | 48,205,499 | 48,213,514 |