nsv912879
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,762
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 680 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 680 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 131 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv912879 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 42,600,577 | 42,602,123 | 42,656,142 | 42,657,338 |
| nsv912879 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 41,229,217 | 41,230,763 | 41,284,782 | 41,285,978 |
| nsv912879 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000020.9 | Chr20 | 40,662,631 | 40,664,177 | 40,718,196 | 40,719,392 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1571235 | copy number loss | IS32653 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1571235 | Remapped | Perfect | NC_000020.11:g.(42 600577_42602123)_( 42656142_42657338) del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 42,600,577 | 42,602,123 | 42,656,142 | 42,657,338 |
| nssv1571235 | Remapped | Perfect | NC_000020.10:g.(41 229217_41230763)_( 41284782_41285978) del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 41,229,217 | 41,230,763 | 41,284,782 | 41,285,978 |
| nssv1571235 | Submitted genomic | NC_000020.9:g.(406 62631_40664177)_(4 0718196_40719392)d el | NCBI36 (hg18) | NC_000020.9 | Chr20 | 40,662,631 | 40,664,177 | 40,718,196 | 40,719,392 |