nsv912880
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:58,491
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 683 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 683 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv912880 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 42,609,864 | 42,612,060 | 42,662,296 | 42,668,354 |
| nsv912880 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 41,238,504 | 41,240,700 | 41,290,936 | 41,296,994 |
| nsv912880 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000020.9 | Chr20 | 40,671,918 | 40,674,114 | 40,724,350 | 40,730,408 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522709 | copy number loss | SP53399 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522709 | Remapped | Perfect | NC_000020.11:g.(42 609864_42612060)_( 42662296_42668354) del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 42,609,864 | 42,612,060 | 42,662,296 | 42,668,354 |
| nssv1522709 | Remapped | Perfect | NC_000020.10:g.(41 238504_41240700)_( 41290936_41296994) del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 41,238,504 | 41,240,700 | 41,290,936 | 41,296,994 |
| nssv1522709 | Submitted genomic | NC_000020.9:g.(406 71918_40674114)_(4 0724350_40730408)d el | NCBI36 (hg18) | NC_000020.9 | Chr20 | 40,671,918 | 40,674,114 | 40,724,350 | 40,730,408 |