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dbVar

Database of genomic structural variation

nsv913440

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:62,718

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 426 SVs from 50 studies. See in: genome view

Remapped(Score: Perfect):18,913,283-18,976,000

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv913440	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000021.9	Chr21	18,913,283	18,918,004	18,970,514	18,976,000
nsv913440	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000021.8	Chr21	20,285,601	20,290,322	20,342,832	20,348,318
nsv913440	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000021.7	Chr21	19,207,472	19,212,193	19,264,703	19,270,189

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536776	copy number loss	MS12947	SNP array	SNP genotyping analysis	22
nssv1594147	copy number loss	IS39716	SNP array	SNP genotyping analysis	40
nssv1594225	copy number loss	IS39718	SNP array	SNP genotyping analysis	74

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536776	Remapped	Perfect	NC_000021.9:g.(189 13283_18918004)_(1 8970514_18976000)d el	GRCh38.p12	First Pass	NC_000021.9	Chr21	18,913,283	18,918,004	18,970,514	18,976,000
nssv1594147	Remapped	Perfect	NC_000021.9:g.(189 13283_18918004)_(1 8970514_18976000)d el	GRCh38.p12	First Pass	NC_000021.9	Chr21	18,913,283	18,918,004	18,970,514	18,976,000
nssv1594225	Remapped	Perfect	NC_000021.9:g.(189 13283_18918004)_(1 8970514_18976000)d el	GRCh38.p12	First Pass	NC_000021.9	Chr21	18,913,283	18,918,004	18,970,514	18,976,000
nssv1536776	Remapped	Perfect	NC_000021.8:g.(202 85601_20290322)_(2 0342832_20348318)d el	GRCh37.p13	First Pass	NC_000021.8	Chr21	20,285,601	20,290,322	20,342,832	20,348,318
nssv1594147	Remapped	Perfect	NC_000021.8:g.(202 85601_20290322)_(2 0342832_20348318)d el	GRCh37.p13	First Pass	NC_000021.8	Chr21	20,285,601	20,290,322	20,342,832	20,348,318
nssv1594225	Remapped	Perfect	NC_000021.8:g.(202 85601_20290322)_(2 0342832_20348318)d el	GRCh37.p13	First Pass	NC_000021.8	Chr21	20,285,601	20,290,322	20,342,832	20,348,318
nssv1536776	Submitted genomic		NC_000021.7:g.(192 07472_19212193)_(1 9264703_19270189)d el	NCBI36 (hg18)		NC_000021.7	Chr21	19,207,472	19,212,193	19,264,703	19,270,189
nssv1594147	Submitted genomic		NC_000021.7:g.(192 07472_19212193)_(1 9264703_19270189)d el	NCBI36 (hg18)		NC_000021.7	Chr21	19,207,472	19,212,193	19,264,703	19,270,189
nssv1594225	Submitted genomic		NC_000021.7:g.(192 07472_19212193)_(1 9264703_19270189)d el	NCBI36 (hg18)		NC_000021.7	Chr21	19,207,472	19,212,193	19,264,703	19,270,189

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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