nsv914411
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,518
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 921 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 921 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 420 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv914411 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nsv914411 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nsv914411 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1534590 | copy number loss | MS11669 | SNP array | SNP genotyping analysis | 42 |
| nssv1535523 | copy number loss | MS12262 | SNP array | SNP genotyping analysis | 34 |
| nssv1565976 | copy number loss | IS30539 | SNP array | SNP genotyping analysis | 72 |
| nssv1568599 | copy number loss | IS31307 | SNP array | SNP genotyping analysis | 14 |
| nssv1569421 | copy number loss | IS31576 | SNP array | SNP genotyping analysis | 25 |
| nssv1569795 | copy number loss | IS31706 | SNP array | SNP genotyping analysis | 29 |
| nssv1574021 | copy number loss | IS33504 | SNP array | SNP genotyping analysis | 330 |
| nssv1574086 | copy number loss | IS33507 | SNP array | SNP genotyping analysis | 41 |
| nssv1575875 | copy number loss | IS33832 | SNP array | SNP genotyping analysis | 20 |
| nssv1582811 | copy number loss | IS36170 | SNP array | SNP genotyping analysis | 26 |
| nssv1587274 | copy number loss | IS37999 | SNP array | SNP genotyping analysis | 47 |
| nssv1588294 | copy number loss | IS38176 | SNP array | SNP genotyping analysis | 145 |
| nssv1588556 | copy number loss | IS38216 | SNP array | SNP genotyping analysis | 15 |
| nssv1593175 | copy number loss | IS39363 | SNP array | SNP genotyping analysis | 51 |
| nssv1595946 | copy number loss | IS40368 | SNP array | SNP genotyping analysis | 50 |
| nssv1597605 | copy number loss | IS40819 | SNP array | SNP genotyping analysis | 36 |
| nssv1598126 | copy number loss | IS41243 | SNP array | SNP genotyping analysis | 94 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1534590 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1535523 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1565976 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1568599 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1569421 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1569795 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1574021 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1574086 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1575875 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1582811 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1587274 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1588294 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1588556 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1593175 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1595946 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1597605 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1598126 | Remapped | Good | NC_000022.11:g.(20 655566_20655566)_( 20679083_20679083) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 20,655,566 | 20,655,566 | 20,679,083 | 20,679,083 |
| nssv1534590 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1535523 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1565976 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1568599 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1569421 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1569795 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1574021 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1574086 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1575875 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1582811 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1587274 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1588294 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1588556 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1593175 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1595946 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1597605 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1598126 | Remapped | Perfect | NC_000022.10:g.(21 009853_21013347)_( 21028946_21033371) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 21,009,853 | 21,013,347 | 21,028,946 | 21,033,371 |
| nssv1534590 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1535523 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1565976 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1568599 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1569421 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1569795 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1574021 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1574086 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1575875 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1582811 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1587274 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1588294 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1588556 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1593175 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1595946 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1597605 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 | ||
| nssv1598126 | Submitted genomic | NC_000022.9:g.(193 39853_19343347)_(1 9358946_19363371)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 19,339,853 | 19,343,347 | 19,358,946 | 19,363,371 |