nsv914688
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:153,380
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1997 SVs from 106 studies. See in: genome view
Overlapping variant regions from other studies: 1997 SVs from 106 studies. See in: genome view
Overlapping variant regions from other studies: 785 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv914688 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nsv914688 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nsv914688 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1519857 | copy number gain | SP50580 | SNP array | SNP genotyping analysis | 13 |
| nssv1525366 | copy number gain | SP56531 | SNP array | SNP genotyping analysis | 8 |
| nssv1563879 | copy number gain | IS30109 | SNP array | SNP genotyping analysis | 11 |
| nssv1566210 | copy number gain | IS30609 | SNP array | SNP genotyping analysis | 9 |
| nssv1580258 | copy number gain | IS35245 | SNP array | SNP genotyping analysis | 22 |
| nssv1588438 | copy number gain | IS38198 | SNP array | SNP genotyping analysis | 13 |
| nssv1593191 | copy number gain | IS39365 | SNP array | SNP genotyping analysis | 13 |
| nssv1594723 | copy number gain | IS40003 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1519857 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1525366 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1563879 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1566210 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1580258 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1588438 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1593191 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1594723 | Remapped | Perfect | NC_000022.11:g.(25 265758_25268441)_( 25410982_25419137) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 25,265,758 | 25,268,441 | 25,410,982 | 25,419,137 |
| nssv1519857 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1525366 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1563879 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1566210 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1580258 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1588438 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1593191 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1594723 | Remapped | Perfect | NC_000022.10:g.(25 661725_25664408)_( 25806949_25815104) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 25,661,725 | 25,664,408 | 25,806,949 | 25,815,104 |
| nssv1519857 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1525366 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1563879 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1566210 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1580258 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1588438 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1593191 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 | ||
| nssv1594723 | Submitted genomic | NC_000022.9:g.(239 91725_23994408)_(2 4136949_24145104)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 23,991,725 | 23,994,408 | 24,136,949 | 24,145,104 |