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dbVar

Database of genomic structural variation

nsv914875

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:92,802

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1647 SVs from 103 studies. See in: genome view

Remapped(Score: Perfect):25,419,137-25,511,938

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv914875	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	25,419,137	25,433,117	25,510,836	25,511,938
nsv914875	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	25,815,104	25,829,084	25,906,803	25,907,905
nsv914875	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000022.9	Chr22	24,145,104	24,159,084	24,236,803	24,237,905

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1531798	copy number gain	MS10658	SNP array	SNP genotyping analysis	12
nssv1534280	copy number gain	MS11505	SNP array	SNP genotyping analysis	11
nssv1539175	copy number gain	MS14247	SNP array	SNP genotyping analysis	14
nssv1542882	copy number gain	MS15925	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1531798	Remapped	Perfect	NC_000022.11:g.(25 419137_25433117)_( 25510836_25511938) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,419,137	25,433,117	25,510,836	25,511,938
nssv1534280	Remapped	Perfect	NC_000022.11:g.(25 419137_25433117)_( 25510836_25511938) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,419,137	25,433,117	25,510,836	25,511,938
nssv1539175	Remapped	Perfect	NC_000022.11:g.(25 419137_25433117)_( 25510836_25511938) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,419,137	25,433,117	25,510,836	25,511,938
nssv1542882	Remapped	Perfect	NC_000022.11:g.(25 419137_25433117)_( 25510836_25511938) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,419,137	25,433,117	25,510,836	25,511,938
nssv1531798	Remapped	Perfect	NC_000022.10:g.(25 815104_25829084)_( 25906803_25907905) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,815,104	25,829,084	25,906,803	25,907,905
nssv1534280	Remapped	Perfect	NC_000022.10:g.(25 815104_25829084)_( 25906803_25907905) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,815,104	25,829,084	25,906,803	25,907,905
nssv1539175	Remapped	Perfect	NC_000022.10:g.(25 815104_25829084)_( 25906803_25907905) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,815,104	25,829,084	25,906,803	25,907,905
nssv1542882	Remapped	Perfect	NC_000022.10:g.(25 815104_25829084)_( 25906803_25907905) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,815,104	25,829,084	25,906,803	25,907,905
nssv1531798	Submitted genomic		NC_000022.9:g.(241 45104_24159084)_(2 4236803_24237905)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,145,104	24,159,084	24,236,803	24,237,905
nssv1534280	Submitted genomic		NC_000022.9:g.(241 45104_24159084)_(2 4236803_24237905)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,145,104	24,159,084	24,236,803	24,237,905
nssv1539175	Submitted genomic		NC_000022.9:g.(241 45104_24159084)_(2 4236803_24237905)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,145,104	24,159,084	24,236,803	24,237,905
nssv1542882	Submitted genomic		NC_000022.9:g.(241 45104_24159084)_(2 4236803_24237905)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,145,104	24,159,084	24,236,803	24,237,905

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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