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dbVar

Database of genomic structural variation

nsv914890

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:85,510

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1624 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):25,433,117-25,518,626

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv914890	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	25,433,117	25,436,452	25,514,700	25,518,626
nsv914890	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	25,829,084	25,832,419	25,910,667	25,914,593
nsv914890	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000022.9	Chr22	24,159,084	24,162,419	24,240,667	24,244,593

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1528106	copy number gain	SP81131	SNP array	SNP genotyping analysis	10
nssv1554257	copy number gain	MS20690	SNP array	SNP genotyping analysis	12
nssv1590831	copy number gain	IS38592	SNP array	SNP genotyping analysis	12
nssv1595509	copy number gain	IS40240	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1528106	Remapped	Perfect	NC_000022.11:g.(25 433117_25436452)_( 25514700_25518626) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,433,117	25,436,452	25,514,700	25,518,626
nssv1554257	Remapped	Perfect	NC_000022.11:g.(25 433117_25436452)_( 25514700_25518626) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,433,117	25,436,452	25,514,700	25,518,626
nssv1590831	Remapped	Perfect	NC_000022.11:g.(25 433117_25436452)_( 25514700_25518626) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,433,117	25,436,452	25,514,700	25,518,626
nssv1595509	Remapped	Perfect	NC_000022.11:g.(25 433117_25436452)_( 25514700_25518626) dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,433,117	25,436,452	25,514,700	25,518,626
nssv1528106	Remapped	Perfect	NC_000022.10:g.(25 829084_25832419)_( 25910667_25914593) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,829,084	25,832,419	25,910,667	25,914,593
nssv1554257	Remapped	Perfect	NC_000022.10:g.(25 829084_25832419)_( 25910667_25914593) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,829,084	25,832,419	25,910,667	25,914,593
nssv1590831	Remapped	Perfect	NC_000022.10:g.(25 829084_25832419)_( 25910667_25914593) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,829,084	25,832,419	25,910,667	25,914,593
nssv1595509	Remapped	Perfect	NC_000022.10:g.(25 829084_25832419)_( 25910667_25914593) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,829,084	25,832,419	25,910,667	25,914,593
nssv1528106	Submitted genomic		NC_000022.9:g.(241 59084_24162419)_(2 4240667_24244593)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,159,084	24,162,419	24,240,667	24,244,593
nssv1554257	Submitted genomic		NC_000022.9:g.(241 59084_24162419)_(2 4240667_24244593)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,159,084	24,162,419	24,240,667	24,244,593
nssv1590831	Submitted genomic		NC_000022.9:g.(241 59084_24162419)_(2 4240667_24244593)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,159,084	24,162,419	24,240,667	24,244,593
nssv1595509	Submitted genomic		NC_000022.9:g.(241 59084_24162419)_(2 4240667_24244593)d up	NCBI36 (hg18)		NC_000022.9	Chr22	24,159,084	24,162,419	24,240,667	24,244,593

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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