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dbVar

Database of genomic structural variation

nsv914901

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:37,428

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1377 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):25,472,274-25,509,701

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv914901	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	25,472,274	25,476,625	25,508,290	25,509,701
nsv914901	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	25,868,241	25,872,592	25,904,257	25,905,668
nsv914901	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000022.9	Chr22	24,198,241	24,202,592	24,234,257	24,235,668

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522316	copy number loss	SP52893	SNP array	SNP genotyping analysis	19
nssv1544002	copy number loss	MS16208	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522316	Remapped	Perfect	NC_000022.11:g.(25 472274_25476625)_( 25508290_25509701) del	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,472,274	25,476,625	25,508,290	25,509,701
nssv1544002	Remapped	Perfect	NC_000022.11:g.(25 472274_25476625)_( 25508290_25509701) del	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,472,274	25,476,625	25,508,290	25,509,701
nssv1522316	Remapped	Perfect	NC_000022.10:g.(25 868241_25872592)_( 25904257_25905668) del	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,868,241	25,872,592	25,904,257	25,905,668
nssv1544002	Remapped	Perfect	NC_000022.10:g.(25 868241_25872592)_( 25904257_25905668) del	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,868,241	25,872,592	25,904,257	25,905,668
nssv1522316	Submitted genomic		NC_000022.9:g.(241 98241_24202592)_(2 4234257_24235668)d el	NCBI36 (hg18)		NC_000022.9	Chr22	24,198,241	24,202,592	24,234,257	24,235,668
nssv1544002	Submitted genomic		NC_000022.9:g.(241 98241_24202592)_(2 4234257_24235668)d el	NCBI36 (hg18)		NC_000022.9	Chr22	24,198,241	24,202,592	24,234,257	24,235,668

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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