nsv914989
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:72,653
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 423 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 425 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv914989 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 33,615,349 | 33,615,349 | 33,688,001 | 33,688,001 |
| nsv914989 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000022.10 | Chr22 | 34,011,334 | 34,013,807 | 34,073,758 | 34,083,987 |
| nsv914989 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 32,341,334 | 32,343,807 | 32,403,758 | 32,413,987 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1554668 | copy number gain | MS20878 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1554668 | Remapped | Good | NC_000022.11:g.(33 615349_33615349)_( 33688001_33688001) dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 33,615,349 | 33,615,349 | 33,688,001 | 33,688,001 |
| nssv1554668 | Remapped | Perfect | NC_000022.10:g.(34 011334_34013807)_( 34073758_34083987) dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 34,011,334 | 34,013,807 | 34,073,758 | 34,083,987 |
| nssv1554668 | Submitted genomic | NC_000022.9:g.(323 41334_32343807)_(3 2403758_32413987)d up | NCBI36 (hg18) | NC_000022.9 | Chr22 | 32,341,334 | 32,343,807 | 32,403,758 | 32,413,987 |