nsv915403
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:84,060
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 470 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 470 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 201 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv915403 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 47,862,933 | 47,869,327 | 47,938,370 | 47,946,992 |
| nsv915403 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000022.10 | Chr22 | 48,258,682 | 48,265,076 | 48,334,119 | 48,342,741 |
| nsv915403 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 46,637,346 | 46,643,740 | 46,712,783 | 46,721,405 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1552502 | copy number loss | MS19466 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1552502 | Remapped | Perfect | NC_000022.11:g.(47 862933_47869327)_( 47938370_47946992) del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 47,862,933 | 47,869,327 | 47,938,370 | 47,946,992 |
| nssv1552502 | Remapped | Perfect | NC_000022.10:g.(48 258682_48265076)_( 48334119_48342741) del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 48,258,682 | 48,265,076 | 48,334,119 | 48,342,741 |
| nssv1552502 | Submitted genomic | NC_000022.9:g.(466 37346_46643740)_(4 6712783_46721405)d el | NCBI36 (hg18) | NC_000022.9 | Chr22 | 46,637,346 | 46,643,740 | 46,712,783 | 46,721,405 |