nsv930473
- Organism: Homo sapiens
- Study:nstd78 (Schrider et al. 2013)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:27
- Description:
retroCNV insertion of a retrotransposition of SKA3 mRNA. - Publication(s):Schrider et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 143 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 143 SVs from 37 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv930473 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 108,715,010 | 108,715,036 |
| nsv930473 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 108,585,737 | 108,585,763 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv1607692 | insertion | Sequencing | Paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1607692 | Remapped | Perfect | NC_000011.10:g.(10 8715010_?)_(?_1087 15036)ins580 | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 108,715,010 | 108,715,036 |
| nssv1607692 | Submitted genomic | NC_000011.9:g.(108 585737_?)_(?_10858 5763)ins580 | GRCh37 (hg19) | NC_000011.9 | Chr11 | 108,585,737 | 108,585,763 |
Validation Information
| Variant Call ID | Experiment ID | Method | Analysis | Result |
|---|---|---|---|---|
| nssv1607692 | 2 | PCR | Manual observation | Pass |