nsv930489
- Organism: Homo sapiens
- Study:nstd78 (Schrider et al. 2013)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Fail
- Clinical Assertions: No
- Region Size:27
- Description:
retroCNV insertion of a retrotransposition of FBXL5 mRNA. - Publication(s):Schrider et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 161 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 161 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv930489 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 40,046,112 | 40,046,138 |
| nsv930489 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000013.10 | Chr13 | 40,620,249 | 40,620,275 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv1607682 | insertion | Sequencing | Paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1607682 | Remapped | Perfect | NC_000013.11:g.(40 046112_?)_(?_40046 138)ins401 | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 40,046,112 | 40,046,138 |
| nssv1607682 | Submitted genomic | NC_000013.10:g.(40 620249_?)_(?_40620 275)ins401 | GRCh37 (hg19) | NC_000013.10 | Chr13 | 40,620,249 | 40,620,275 |
Validation Information
| Variant Call ID | Experiment ID | Method | Analysis | Result |
|---|---|---|---|---|
| nssv1607682 | 2 | PCR | Manual observation | Fail |