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dbVar

Database of genomic structural variation

nsv932765

Organism: Homo sapiens

Study:nstd79 (Dittwald et al. 2013)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:2,765,956

Publication(s):Dittwald et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 8394 SVs from 133 studies. See in: genome view

Remapped(Score: Good):28,134,730-30,900,685

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv932765	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	28,134,730	28,134,730	30,900,685	30,900,685
nsv932765	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	28,379,876	29,156,958	30,370,111	31,192,888

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis
nssv1611115	deletion	1978	Oligo aCGH	Probe signal intensity
nssv1611826	deletion	1760	Oligo aCGH	Probe signal intensity
nssv1611947	deletion	1406	Oligo aCGH	Probe signal intensity
nssv1612359	duplication	1286	Oligo aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1611115	Remapped	Good	NT_187660.1:g.(119 6495_1196495)_(264 7127_2647127)del	GRCh38.p12	Second Pass	NT_187660.1	Chr15\|NT_1 87660.1	1,196,495	1,196,495	2,647,127	2,647,127
nssv1611115	Remapped	Good	NW_011332701.1:g.( 1084011_1084011)_( 2534643_2534643)de l	GRCh38.p12	Second Pass	NW_011332701.1	Chr15\|NW_0 11332701.1	1,084,011	1,084,011	2,534,643	2,534,643
nssv1611115	Remapped	Perfect	NC_000015.10:g.(28 921540_28921540)_( 30362152_30362152) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	28,921,540	28,921,540	30,362,152	30,362,152
nssv1611826	Remapped	Perfect	NC_000015.10:g.(28 921540_28921540)_( 31000272_31000272) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	28,921,540	28,921,540	31,000,272	31,000,272
nssv1611947	Remapped	Perfect	NC_000015.10:g.(28 921585_28921585)_( 31000272_31000272) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	28,921,585	28,921,585	31,000,272	31,000,272
nssv1612359	Remapped	Perfect	NC_000015.10:g.(28 921585_28921585)_( 31000272_31000272) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	28,921,585	28,921,585	31,000,272	31,000,272
nssv1611947	Remapped	Perfect	NC_000015.9:g.(292 13788_29213846)_(3 0300265_31292475)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	29,213,788	29,213,846	30,300,265	31,292,475
nssv1612359	Remapped	Perfect	NC_000015.9:g.(292 13788_29213846)_(3 0300265_31292475)d up	GRCh37.p13	First Pass	NC_000015.9	Chr15	29,213,788	29,213,846	30,300,265	31,292,475
nssv1611826	Submitted genomic		NC_000015.9:g.(292 13743_29213787)_(3 0300265_31292475)d el	GRCh37 (hg19)		NC_000015.9	Chr15	29,213,743	29,213,787	30,300,265	31,292,475
nssv1611115	Submitted genomic		NC_000015.9:g.(292 13743_29213787)_(3 0654079_30654355)d el	GRCh37 (hg19)		NC_000015.9	Chr15	29,213,743	29,213,787	30,654,079	30,654,355
nssv1611947	Submitted genomic		NC_000015.8:g.(270 01080_27001138)_(2 8087557_29079767)d el	NCBI36 (hg18)		NC_000015.8	Chr15	27,001,080	27,001,138	28,087,557	29,079,767
nssv1612359	Submitted genomic		NC_000015.8:g.(270 01080_27001138)_(2 8087557_29079767)d up	NCBI36 (hg18)		NC_000015.8	Chr15	27,001,080	27,001,138	28,087,557	29,079,767

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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