nsv939535
- Organism: Homo sapiens
- Study:nstd84 (de Ligt et al. 2013)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:183,023
- Publication(s):de Ligt et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 953 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 953 SVs from 90 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv939535 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 167,888,096 | 167,888,096 | 168,071,118 | 168,071,118 |
| nsv939535 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 168,809,247 | 168,809,247 | 168,992,269 | 168,992,269 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv1668633 | copy number gain | 3 | Oligo aCGH | Probe signal intensity | 3 | 1,181 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1668633 | Remapped | Perfect | NC_000004.12:g.(16 7888096_?)_(?_1680 71118)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,888,096 | 168,071,118 |
| nssv1668633 | Submitted genomic | NC_000004.11:g.(16 8809247_?)_(?_1689 92269)dup | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,809,247 | 168,992,269 |