nsv940379
- Organism: Homo sapiens
- Study:nstd84 (de Ligt et al. 2013)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78,996
- Publication(s):de Ligt et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4003 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 3996 SVs from 95 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv940379 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 20,349,698 | 20,349,698 | 20,428,693 | 20,428,693 |
| nsv940379 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 20,554,951 | 20,554,951 | 20,633,946 | 20,633,946 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv1671373 | copy number loss | 1 | Oligo aCGH | Probe signal intensity | 0 | 1,040 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1671373 | Remapped | Perfect | NC_000015.10:g.(20 349698_?)_(?_20428 693)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,349,698 | 20,428,693 |
| nssv1671373 | Submitted genomic | NC_000015.9:g.(205 54951_?)_(?_206339 46)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 20,554,951 | 20,633,946 |