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dbVar

Database of genomic structural variation

nsv9420

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:34,117

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 274 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):28,779,385-28,813,501

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv9420	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	28,779,385	28,813,501
nsv9420	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	28,790,706	28,824,822
nsv9420	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000016.8	Chr16	28,698,207	28,732,323

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv22254	copy number loss	NA18975	Oligo aCGH	Probe signal intensity	529
nssv24013	copy number gain	NA11830	Oligo aCGH	Probe signal intensity	568

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv22254	Remapped	Perfect	NC_000016.10:g.(28 779385_28781520)_( 28811114_28813501) del	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,779,385	28,781,520	28,811,114	28,813,501
nssv24013	Remapped	Perfect	NC_000016.10:g.(28 797629_28799023)_( 28799029_28799725) dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,797,629	28,799,023	28,799,029	28,799,725
nssv22254	Remapped	Perfect	NC_000016.9:g.(287 90706_28792841)_(2 8822435_28824822)d el	GRCh37.p13	First Pass	NC_000016.9	Chr16	28,790,706	28,792,841	28,822,435	28,824,822
nssv24013	Remapped	Perfect	NC_000016.9:g.(288 08950_28810344)_(2 8810350_28811046)d up	GRCh37.p13	First Pass	NC_000016.9	Chr16	28,808,950	28,810,344	28,810,350	28,811,046
nssv22254	Submitted genomic		NC_000016.8:g.(286 98207_28700342)_(2 8729936_28732323)d el	NCBI35 (hg17)		NC_000016.8	Chr16	28,698,207	28,700,342	28,729,936	28,732,323
nssv24013	Submitted genomic		NC_000016.8:g.(287 16451_28717845)_(2 8717851_28718547)d up	NCBI35 (hg17)		NC_000016.8	Chr16	28,716,451	28,717,845	28,717,851	28,718,547

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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