nsv949460
- Organism: Homo sapiens
- Study:nstd85 (vanSilfhout et al. 2013)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:222,477
- Publication(s):Vulto-van Silfhout et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 769 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 770 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv949460 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 29,662,324 | 29,884,800 |
| nsv949460 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 29,680,441 | 29,902,917 |
| nsv949460 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 29,440,098 | 29,662,574 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv2767953 | copy number loss | SNP array | SNP genotyping analysis | 1 |
| nssv2768074 | copy number loss | SNP array | SNP genotyping analysis | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2767953 | Remapped | Perfect | NC_000023.11:g.(?_ 29662324)_(2988480 0_?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 29,662,324 | 29,884,800 |
| nssv2768074 | Remapped | Perfect | NC_000023.11:g.(?_ 29662324)_(2988480 0_?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 29,662,324 | 29,884,800 |
| nssv2767953 | Remapped | Perfect | NC_000023.10:g.(?_ 29680441)_(2990291 7_?)del | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 29,680,441 | 29,902,917 |
| nssv2768074 | Remapped | Perfect | NC_000023.10:g.(?_ 29680441)_(2990291 7_?)del | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 29,680,441 | 29,902,917 |
| nssv2767953 | Submitted genomic | NC_000023.8:g.(?_2 9440098)_(29662574 _?)del | NCBI35 (hg17) | NC_000023.8 | ChrX | 29,440,098 | 29,662,574 | ||
| nssv2768074 | Submitted genomic | NC_000023.8:g.(?_2 9440098)_(29662574 _?)del | NCBI35 (hg17) | NC_000023.8 | ChrX | 29,440,098 | 29,662,574 |