nsv958885
- Organism: Homo sapiens
- Study:nstd83 (Morak et al. 2013)
- Variant Type:translocation
- Method Type:Sequencing
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: Yes
- Description:given coordinates are the coordinates of the fusion - ETV6 fuses here to RUNX3
- Publication(s):Morak et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Variant Region - no placement information
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|---|
| nssv3020563 | interchromosomal translocation | 7 | Sequencing | Sequence alignment | Childhood B Acute Lymphoblastic Leukemia | Pathogenic | Submitter | nssv3020564, nssv3020576, nssv3020585 |
| nssv3020564 | interchromosomal translocation | 7 | Sequencing | Sequence alignment | Childhood B Acute Lymphoblastic Leukemia | Pathogenic | Submitter | nssv3020563, nssv3020576, nssv3020585 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv3020563 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 4,678,997 | 4,678,997 | + |
| nssv3020564 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 20,651,185 | 20,651,185 | - |
| nssv3020563 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 4,788,163 | 4,788,163 | + | ||
| nssv3020564 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 22,023,498 | 22,023,498 | - |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | Sample ID | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Gender | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|
| nssv3020563 | 7 | interchromosomal translocation | Childhood B Acute Lymphoblastic Leukemia | Pathogenic | Submitter | Female | nssv3020564, nssv3020576, nssv3020585 |
| nssv3020564 | 7 | interchromosomal translocation | Childhood B Acute Lymphoblastic Leukemia | Pathogenic | Submitter | Female | nssv3020563, nssv3020576, nssv3020585 |