nsv959156
- Organism: Homo sapiens
- Study:nstd86 (Poultney et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:63,338
- Publication(s):Poultney et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 572 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 208 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 357 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 572 SVs from 65 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv959156 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 29,053,883 | 29,117,135 |
| nsv959156 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 1,328,841 | 1,392,178 |
| nsv959156 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 1,216,357 | 1,279,694 |
| nsv959156 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 29,346,086 | 29,409,338 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3021486 | duplication | Sequencing | Read depth |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv3021486 | Remapped | Good | NT_187660.1:g.(546 742_546742)_(15443 40_1544340)dup | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 546,742 | 546,742 | 1,544,340 | 1,544,340 |
| nssv3021486 | Remapped | Good | NW_011332701.1:g.( 432956_432956)_(14 31856_1431856)dup | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 432,956 | 432,956 | 1,431,856 | 1,431,856 |
| nssv3021486 | Remapped | Good | NC_000015.10:g.(28 299518_28299518)_( 29268789_29268789) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 28,299,518 | 28,299,518 | 29,268,789 | 29,268,789 |
| nssv3021486 | Submitted genomic | NC_000015.9:g.(285 44664_29346086)_(2 9409338_29560993)d up | GRCh37 (hg19) | NC_000015.9 | Chr15 | 28,544,664 | 29,346,086 | 29,409,338 | 29,560,993 |