nsv959465
- Organism: Homo sapiens
- Study:nstd86 (Poultney et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,770
- Publication(s):Poultney et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 261 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 247 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv959465 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 45,728,862 | 45,785,631 |
| nsv959465 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 46,224,310 | 46,281,079 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3020717 | duplication | Sequencing | Read depth |
| nssv3021953 | deletion | Sequencing | Read depth |
| nssv3020796 | duplication | Sequencing | Read depth |
| nssv3021204 | duplication | Sequencing | Read depth |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv3020717 | Remapped | Perfect | NC_000010.11:g.(45 727539_45728862)_( 45769618_45778953) dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,727,539 | 45,728,862 | 45,769,618 | 45,778,953 |
| nssv3021953 | Remapped | Perfect | NC_000010.11:g.(45 727539_45728862)_( 45769618_45778953) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,727,539 | 45,728,862 | 45,769,618 | 45,778,953 |
| nssv3020796 | Remapped | Perfect | NC_000010.11:g.(45 729026_45737983)_( 45765810_45769455) dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,729,026 | 45,737,983 | 45,765,810 | 45,769,455 |
| nssv3021204 | Remapped | Perfect | NC_000010.11:g.(45 738045_45743390)_( 45785631_45825913) dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,738,045 | 45,743,390 | 45,785,631 | 45,825,913 |
| nssv3020717 | Submitted genomic | NC_000010.10:g.(46 222987_46224310)_( 46265066_46274401) dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,222,987 | 46,224,310 | 46,265,066 | 46,274,401 | ||
| nssv3021953 | Submitted genomic | NC_000010.10:g.(46 222987_46224310)_( 46265066_46274401) del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,222,987 | 46,224,310 | 46,265,066 | 46,274,401 | ||
| nssv3020796 | Submitted genomic | NC_000010.10:g.(46 224474_46233431)_( 46261258_46264903) dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,224,474 | 46,233,431 | 46,261,258 | 46,264,903 | ||
| nssv3021204 | Submitted genomic | NC_000010.10:g.(46 233493_46238838)_( 46281079_46321361) dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,233,493 | 46,238,838 | 46,281,079 | 46,321,361 |