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dbVar

Database of genomic structural variation

nsv962219

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:15,565

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 947 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):78,334,119-78,349,683

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv962219	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	78,334,119	78,349,683
nsv962219	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	78,368,016	78,383,580
nsv962219	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	76,925,517	76,941,081

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2756802	deletion	HGDP00521	Sequencing	Read depth	1	17,171
nssv2765094	deletion	HGDP00927	Sequencing	Read depth	1	17,185
nssv2766544	deletion	HGDP00665	Sequencing	Read depth	0	17,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2756802	Remapped	Perfect	NC_000016.10:g.(?_ 78334119)_(7834968 3_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,334,119	78,349,683
nssv2765094	Remapped	Perfect	NC_000016.10:g.(?_ 78334119)_(7834968 3_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,334,119	78,349,683
nssv2766544	Remapped	Perfect	NC_000016.10:g.(?_ 78334119)_(7834968 3_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,334,119	78,349,683
nssv2756802	Remapped	Perfect	NC_000016.9:g.(?_7 8368016)_(78383580 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	78,368,016	78,383,580
nssv2765094	Remapped	Perfect	NC_000016.9:g.(?_7 8368016)_(78383580 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	78,368,016	78,383,580
nssv2766544	Remapped	Perfect	NC_000016.9:g.(?_7 8368016)_(78383580 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	78,368,016	78,383,580
nssv2756802	Submitted genomic		NC_000016.8:g.(?_7 6925517)_(76941081 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	76,925,517	76,941,081
nssv2765094	Submitted genomic		NC_000016.8:g.(?_7 6925517)_(76941081 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	76,925,517	76,941,081
nssv2766544	Submitted genomic		NC_000016.8:g.(?_7 6925517)_(76941081 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	76,925,517	76,941,081

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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