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dbVar

Database of genomic structural variation

nsv9643

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:296,947

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 590 SVs from 33 studies. See in: genome view

Remapped(Score: Perfect):71,920,707-72,217,653

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv9643	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	71,920,707	72,217,653
nsv9643	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000018.9	Chr18	69,587,943	69,884,888
nsv9643	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000018.8	Chr18	67,738,923	68,035,868

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv24669	copy number loss	NA19007	Oligo aCGH	Probe signal intensity	581
nssv28416	copy number loss	NA19221	Oligo aCGH	Probe signal intensity	857

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv24669	Remapped	Perfect	NC_000018.10:g.(71 920707_71920707)_( 72217653_72217653) del	GRCh38.p12	First Pass	NC_000018.10	Chr18	71,920,707	71,920,707	72,217,653	72,217,653
nssv28416	Remapped	Perfect	NC_000018.10:g.(72 161787_72162231)_( 72183121_72183861) del	GRCh38.p12	First Pass	NC_000018.10	Chr18	72,161,787	72,162,231	72,183,121	72,183,861
nssv24669	Remapped	Perfect	NC_000018.9:g.(695 87943_69598146)_(6 9882127_69884888)d el	GRCh37.p13	First Pass	NC_000018.9	Chr18	69,587,943	69,598,146	69,882,127	69,884,888
nssv28416	Remapped	Perfect	NC_000018.9:g.(698 29022_69829466)_(6 9850356_69851096)d el	GRCh37.p13	First Pass	NC_000018.9	Chr18	69,829,022	69,829,466	69,850,356	69,851,096
nssv24669	Submitted genomic		NC_000018.8:g.(677 38923_67749126)_(6 8033107_68035868)d el	NCBI35 (hg17)		NC_000018.8	Chr18	67,738,923	67,749,126	68,033,107	68,035,868
nssv28416	Submitted genomic		NC_000018.8:g.(679 80002_67980446)_(6 8001336_68002076)d el	NCBI35 (hg17)		NC_000018.8	Chr18	67,980,002	67,980,446	68,001,336	68,002,076

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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