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dbVar

Database of genomic structural variation

nsv965411

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:7,497

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 504 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):191,346,443-191,353,939

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv965411	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	191,346,443	191,353,939
nsv965411	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	191,064,232	191,071,728
nsv965411	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	192,546,926	192,554,422

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2758948	deletion	HGDP00521	Sequencing	Read depth	1	17,171
nssv2762602	deletion	HGDP00998	Sequencing	Read depth	0	17,267
nssv2765626	deletion	HGDP00927	Sequencing	Read depth	0	17,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2758948	Remapped	Perfect	NC_000003.12:g.(?_ 191346443)_(191353 939_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,346,443	191,353,939
nssv2762602	Remapped	Perfect	NC_000003.12:g.(?_ 191346443)_(191353 939_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,346,443	191,353,939
nssv2765626	Remapped	Perfect	NC_000003.12:g.(?_ 191346443)_(191353 939_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,346,443	191,353,939
nssv2758948	Remapped	Perfect	NC_000003.11:g.(?_ 191064232)_(191071 728_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,064,232	191,071,728
nssv2762602	Remapped	Perfect	NC_000003.11:g.(?_ 191064232)_(191071 728_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,064,232	191,071,728
nssv2765626	Remapped	Perfect	NC_000003.11:g.(?_ 191064232)_(191071 728_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,064,232	191,071,728
nssv2758948	Submitted genomic		NC_000003.10:g.(?_ 192546926)_(192554 422_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	192,546,926	192,554,422
nssv2762602	Submitted genomic		NC_000003.10:g.(?_ 192546926)_(192554 422_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	192,546,926	192,554,422
nssv2765626	Submitted genomic		NC_000003.10:g.(?_ 192546926)_(192554 422_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	192,546,926	192,554,422

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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